If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ), 'gf_id' => 'HOM05D000745', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000745' ), 'data_identifier' => 'HOM05D000745', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000745', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01200' => 'bna', 'A05p20140' => 'bna', 'A05p29060' => 'bna', 'A06p03110' => 'bna', 'A07p00850' => 'bna', 'A08p03140' => 'bna', 'A08p22880' => 'bna', 'A09p12620' => 'bna', 'A10p06170' => 'bna', 'Aa31LG10G3820' => 'aar', 'Aa31LG2G21430' => 'aar', 'Aa31LG6G14740' => 'aar', 'Aa31LG8G16810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.333' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2214' => 'aag', 'Actinidia06931' => 'ach', 'Actinidia11664' => 'ach', 'Actinidia11942' => 'ach', 'Actinidia15418' => 'ach', 'Actinidia16352' => 'ach', 'Actinidia16983' => 'ach', 'Actinidia17521' => 'ach', 'Actinidia17522' => 'ach', 'Actinidia17914' => 'ach', 'Actinidia23984' => 'ach', 'Actinidia32649' => 'ach', 'Actinidia36396' => 'ach', 'Actinidia39782' => 'ach', 'Ah.01g017350' => 'amhyb', 'Ah.05g166760' => 'amhyb', 'Ah.06g193810' => 'amhyb', 'AL1G54260' => 'aly', 'AL1G58100' => 'aly', 'AL3G33720' => 'aly', 'AL3G48360' => 'aly', 'AL7G12830' => 'aly', 'AL7G23310' => 'aly', 'Aqoxy289s003' => 'aox', 'Aqoxy2G00266' => 'aox', 'Aqoxy5G01781_Aqoxy5G01782' => 'aox', 'Aqoxy5G01879' => 'aox', 'Aqoxy7G01397' => 'aox', 'Aqoxy7G02434' => 'aox', 'Aqoxy7G03980' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03VRI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0INE4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1V9R9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41QS9J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47WA7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.489DAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.638YZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86IGSK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L28UA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A29JGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58S1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ3B6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZMQ8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E06E3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW5KSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDA52V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVM5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHU4FI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MTP01V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1N6FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TB97SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WF73FH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YJI1GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT3TY8' => 'arhy', 'AT1G47840' => 'ath', 'AT1G47845' => 'ath', 'AT1G50460' => 'ath', 'AT2G19860' => 'ath', 'AT3G20040' => 'ath', 'AT4G29130' => 'ath', 'AT4G37840' => 'ath', 'ATR0481G001' => 'atr', 'ATR0481G003' => 'atr', 'ATR0560G002' => 'atr', 'ATR0705G051' => 'atr', 'ATR0721G024' => 'atr', 'Atru.chr1.3542' => 'acertr', 'Atru.chr13.300' => 'acertr', 'Atru.chr13.301' => 'acertr', 'Atru.chr3.1102' => 'acertr', 'Atru.chr3.1106' => 'acertr', 'Atru.chr3.2631' => 'acertr', 'Atru.chr7.1470' => 'acertr', 'AUR62000163' => 'cqu', 'AUR62010888' => 'cqu', 'AUR62021400' => 'cqu', 'AUR62022219' => 'cqu', 'AUR62022220' => 'cqu', 'AUR62022221' => 'cqu', 'AUR62031933' => 'cqu', 'AUR62031934' => 'cqu', 'AUR62033832' => 'cqu', 'AUR62035751' => 'cqu', 'AUR62039848' => 'cqu', 'BcaB02g11148' => 'bca', 'BcaB03g16774' => 'bca', 'BcaB04g17247' => 'bca', 'BcaB06g26074' => 'bca', 'BcaB07g33483' => 'bca', 'BcaB07g33811' => 'bca', 'BcaB08g34889' => 'bca', 'BcaC01g00372' => 'bca', 'BcaC01g01232' => 'bca', 'BcaC01g01233' => 'bca', 'BcaC04g22817' => 'bca', 'BcaC05g27415' => 'bca', 'BcaC05g28369' => 'bca', 'BcaC06g36647' => 'bca', 'BcaC07g41233' => 'bca', 'BcaC08g42978' => 'bca', 'BcaC08g43216' => 'bca', 'BcaC09g50347' => 'bca', 'BolC1t00133H' => 'bol', 'BolC1t02585H' => 'bol', 'BolC3t20142H' => 'bol', 'BolC3t21283H' => 'bol', 'BolC5t32096H' => 'bol', 'BolC5t33172H' => 'bol', 'BolC6t35349H' => 'bol', 'BolC6t35675H' => 'bol', 'BolC7t40590H' => 'bol', 'BolC7t42439H' => 'bol', 'BolC8t51800H' => 'bol', 'BolC9t54399H' => 'bol', 'BraA01t00119Z' => 'bra', 'BraA05t20923Z' => 'bra', 'BraA05t21790Z' => 'bra', 'BraA06t23524Z' => 'bra', 'BraA07t27883Z' => 'bra', 'BraA08t32345Z' => 'bra', 'BraA08t34251Z' => 'bra', 'BraA09t36908Z' => 'bra', 'BraA10t42885Z' => 'bra', 'C01p01360' => 'bna', 'C01p26380' => 'bna', 'C03p79000' => 'bna', 'C03p89660' => 'bna', 'C05p33650' => 'bna', 'C05p44490' => 'bna', 'C06p02190' => 'bna', 'C06p05650' => 'bna', 'C07p01820' => 'bna', 'C07p19260' => 'bna', 'C08p42380' => 'bna', 'C09p14970' => 'bna', 'CAN.G1061.10' => 'can', 'CAN.G1143.18' => 'can', 'CAN.G1241.28' => 'can', 'CAN.G19550.1' => 'can', 'CAN.G2061.2' => 'can', 'CAN.G311.25' => 'can', 'CAN.G468.10' => 'can', 'CAN.G73.9' => 'can', 'CANSAT25G2027' => 'cansat', 'CANSAT54G1204' => 'cansat', 'CANSAT56G0872' => 'cansat', 'CANSAT56G2289' => 'cansat', 'CARHR037440' => 'chi', 'CARHR040470' => 'chi', 'CARHR095570' => 'chi', 'CARHR110290' => 'chi', 'CARHR236860' => 'chi', 'CARHR246230' => 'chi', 'Carub.0001s3696' => 'cru', 'Carub.0001s3954' => 'cru', 'Carub.0003s1996' => 'cru', 'Carub.0003s3413' => 'cru', 'Carub.0007s0238' => 'cru', 'Carub.0007s1146' => 'cru', 'Ca_13426_v3' => 'car', 'Ca_17367_v3' => 'car', 'Ca_22082_v3' => 'car', 'Ca_23266_v3' => 'car', 'Ca_23275_v3' => 'car', 'Ca_24491_v3' => 'car', 'Ca_24492_v3' => 'car', 'Ca_25578_v3' => 'car', 'CBR_g19571' => 'cbr', 'Cc01_g06200' => 'ccan', 'Cc04_g02500' => 'ccan', 'Cc06_g10510' => 'ccan', 'Cc06_g10530' => 'ccan', 'Cc07_g07670' => 'ccan', 'Cc10_g01720' => 'ccan', 'CDE01G0088' => 'cde', 'CDE02G2047' => 'cde', 'CDE05G1812' => 'cde', 'CDE05G2346' => 'cde', 'CDE12G0206' => 'cde', 'Cfa003170' => 'cfa', 'Cfa003640' => 'cfa', 'Cfa013944' => 'cfa', 'Cfa021743' => 'cfa', 'Cfa025457' => 'cfa', 'Cfa027145' => 'cfa', 'Ciclev10000939m.g' => 'ccl', 'Ciclev10008086m.g' => 'ccl', 'Ciclev10014962m.g' => 'ccl', 'Ciclev10025452m.g' => 'ccl', 'Ciclev10027315m.g' => 'ccl', 'CiPaw.03G223700' => 'cil', 'CiPaw.04G156000' => 'cil', 'CiPaw.04G157100' => 'cil', 'CiPaw.07G150700' => 'cil', 'CiPaw.13G153900' => 'cil', 'CiPaw.14G116000' => 'cil', 'ClCG01G018030' => 'cla', 'ClCG02G023040' => 'cla', 'ClCG03G013050' => 'cla', 'ClCG03G016110' => 'cla', 'ClCG05G018300' => 'cla', 'ClCG11G002080' => 'cla', 'ClCG11G002110' => 'cla', 'COL.COLO4_08084' => 'col', 'COL.COLO4_11656' => 'col', 'COL.COLO4_11657' => 'col', 'COL.COLO4_26154' => 'col', 'COL.COLO4_30522' => 'col', 'COL.COLO4_34734' => 'col', 'COL.COLO4_34735' => 'col', 'COL.COLO4_34772' => 'col', 'COL.COLO4_36475' => 'col', 'Cpa.g.sc129.39' => 'cpa', 'Cpa.g.sc25.19' => 'cpa', 'Cpa.g.sc25.20' => 'cpa', 'Cpa.g.sc25.21' => 'cpa', 'Cpa.g.sc26.36' => 'cpa', 'Cpa.g.sc78.23' => 'cpa', 'Cpa.g.sc84.20' => 'cpa', 'Cre02.g117500' => 'cre', 'CsaV3_1G039830' => 'csa', 'CsaV3_1G043010' => 'csa', 'CsaV3_2G001860' => 'csa', 'CsaV3_2G001890' => 'csa', 'CsaV3_2G001900' => 'csa', 'CsaV3_3G045830' => 'csa', 'CsaV3_6G039140' => 'csa', 'CsaV3_6G044550' => 'csa', 'CSS0009689' => 'camsi', 'CSS0017205' => 'camsi', 'CSS0019857' => 'camsi', 'CSS0029926' => 'camsi', 'CSS0046658' => 'camsi', 'DCAR_007586' => 'dca', 'DCAR_022962' => 'dca', 'DCAR_026354' => 'dca', 'DCAR_028657' => 'dca', 'DCAR_029969' => 'dca', 'Dinv05710' => 'din', 'Dinv22153' => 'din', 'Dinv23074' => 'din', 'Dinv30432' => 'din', 'Dinv31839' => 'din', 'Dinv36215' => 'din', 'Dinv36683' => 'din', 'Dinv37972' => 'din', 'Dinv39513' => 'din', 'Dinv42249' => 'din', 'Duzib041G0675' => 'dzi', 'Duzib084G0924' => 'dzi', 'Duzib150G0026' => 'dzi', 'Duzib150G0157' => 'dzi', 'Duzib150G1590' => 'dzi', 'Duzib160G0179' => 'dzi', 'Duzib168G1177' => 'dzi', 'Duzib192G0411' => 'dzi', 'Duzib205G1490' => 'dzi', 'Duzib264G0285' => 'dzi', 'Duzib268G1778' => 'dzi', 'ECA233G1539' => 'eca', 'ECA234G3160' => 'eca', 'ECA238G4503' => 'eca', 'ECA246G0251' => 'eca', 'ECA247G1589' => 'eca', 'EL10Ac1g02295' => 'bvu', 'EL10Ac4g10187' => 'bvu', 'EL10Ac8g18375' => 'bvu', 'EL10Ac9g21195' => 'bvu', 'EL10Ac9g21196' => 'bvu', 'Eucgr.B03711' => 'egr', 'Eucgr.C00559' => 'egr', 'Eucgr.C00569' => 'egr', 'Eucgr.C00975' => 'egr', 'Eucgr.C00983' => 'egr', 'Eucgr.C03728' => 'egr', 'Eucgr.F01647' => 'egr', 'Eucgr.J00734' => 'egr', 'FAN02G0288' => 'fan', 'FAN05G3170' => 'fan', 'FAN09G1537' => 'fan', 'FAN14G1698' => 'fan', 'FAN14G3806' => 'fan', 'FAN15G1388' => 'fan', 'FAN19G1032' => 'fan', 'FAN19G2021' => 'fan', 'FAN23G2937' => 'fan', 'FAN23G2987' => 'fan', 'FAN26G0555' => 'fan', 'FAN26G1076' => 'fan', 'FAN26G1177' => 'fan', 'FAN27G1072' => 'fan', 'FAN28G2156' => 'fan', 'FAN28G2968' => 'fan', 'FvH4_1g06270' => 'fve', 'FvH4_1g18730' => 'fve', 'FvH4_2g38530' => 'fve', 'FvH4_6g22420' => 'fve', 'FvH4_6g32470' => 'fve', 'Glyma.01G007200' => 'gma', 'Glyma.01G007300' => 'gma', 'Glyma.01G226900' => 'gma', 'Glyma.05G110500' => 'gma', 'Glyma.05G226600' => 'gma', 'Glyma.07G015102' => 'gma', 'Glyma.07G124500' => 'gma', 'Glyma.08G033300' => 'gma', 'Glyma.08G200600' => 'gma', 'Glyma.11G015800' => 'gma', 'Glyma.11G095600' => 'gma', 'Glyma.12G021700' => 'gma', 'Glyma.14G218800' => 'gma', 'Glyma.17G156200' => 'gma', 'Glyma.17G257800' => 'gma', 'Gohir.A05G129500' => 'ghi', 'Gohir.A06G004500' => 'ghi', 'Gohir.A06G067400' => 'ghi', 'Gohir.A09G081100' => 'ghi', 'Gohir.A10G065100' => 'ghi', 'Gohir.A11G049500' => 'ghi', 'Gohir.A13G196400' => 'ghi', 'Gohir.A13G217300' => 'ghi', 'Gohir.D05G134100' => 'ghi', 'Gohir.D06G000300' => 'ghi', 'Gohir.D06G066000' => 'ghi', 'Gohir.D09G081200' => 'ghi', 'Gohir.D10G066600' => 'ghi', 'Gohir.D11G053000' => 'ghi', 'Gohir.D13G201600' => 'ghi', 'Gohir.D13G220900' => 'ghi', 'Gorai.006G096800' => 'gra', 'Gorai.007G057600' => 'gra', 'Gorai.009G137700' => 'gra', 'Gorai.010G004700' => 'gra', 'Gorai.010G077400' => 'gra', 'Gorai.011G070700' => 'gra', 'Gorai.013G230400' => 'gra', 'Gorai.013G251900' => 'gra', 'GSVIVG01000351001' => 'vvi', 'GSVIVG01000358001' => 'vvi', 'GSVIVG01002667001' => 'vvi', 'GSVIVG01006129001' => 'vvi', 'GSVIVG01009899001' => 'vvi', 'GSVIVG01015297001' => 'vvi', 'GSVIVG01016971001' => 'vvi', 'GSVIVG01031551001' => 'vvi', 'GSVIVG01034893001' => 'vvi', 'HanXRQChr01g0011631' => 'han', 'HanXRQChr02g0051291' => 'han', 'HanXRQChr04g0095871' => 'han', 'HanXRQChr06g0184771' => 'han', 'HanXRQChr07g0194871' => 'han', 'HanXRQChr10g0313171' => 'han', 'HanXRQChr10g0318921' => 'han', 'HanXRQChr12g0355131' => 'han', 'HanXRQChr12g0377061' => 'han', 'HanXRQChr13g0401481' => 'han', 'HanXRQChr14g0438061' => 'han', 'HanXRQChr14g0452851' => 'han', 'HanXRQChr17g0562801' => 'han', 'Haze_15854' => 'cav', 'Haze_22628' => 'cav', 'Haze_23191' => 'cav', 'Haze_25828' => 'cav', 'Haze_27051' => 'cav', 'Haze_27164' => 'cav', 'Hma1.2p1_0023F.1_g015440' => 'hma', 'Hma1.2p1_0430F.1_g151340' => 'hma', 'Hma1.2p1_0571F.1_g180580' => 'hma', 'Hma1.2p1_1390F.1_g280070' => 'hma', 'Hma1.2p1_1570F.1_g291250' => 'hma', 'HPP92_005184' => 'vpl', 'HPP92_006367' => 'vpl', 'HPP92_006368' => 'vpl', 'HPP92_006369' => 'vpl', 'HPP92_006709' => 'vpl', 'HPP92_006710' => 'vpl', 'HPP92_011488' => 'vpl', 'HPP92_025002' => 'vpl', 'Hund00699' => 'sun', 'Hund05207' => 'sun', 'Hund07608' => 'sun', 'Hund09100' => 'sun', 'Hund14159' => 'sun', 'Hund21996' => 'sun', 'Hund26282' => 'sun', 'Lalb_Chr05g0211461' => 'lal', 'Lalb_Chr05g0223251' => 'lal', 'Lalb_Chr09g0320551' => 'lal', 'Lalb_Chr09g0331571' => 'lal', 'Lalb_Chr14g0369861' => 'lal', 'Lalb_Chr14g0371901' => 'lal', 'Lalb_Chr16g0385931' => 'lal', 'Lalb_Chr16g0385941' => 'lal', 'Lalb_Chr16g0388191' => 'lal', 'Lalb_Chr20g0119931' => 'lal', 'Lalb_Chr24g0397241' => 'lal', 'Lalb_Chr25g0280181' => 'lal', 'Lj1C317T6' => 'lonja', 'Lj2g0020627' => 'lja', 'Lj2g0026144' => 'lja', 'Lj3g0022929' => 'lja', 'Lj4A25T54' => 'lonja', 'Lj4A378T23' => 'lonja', 'Lj4C171T5' => 'lonja', 'Lj4C376G3' => 'lonja', 'Lj4C376T5' => 'lonja', 'Lj4C378T0' => 'lonja', 'Lj4g0026000' => 'lja', 'Lj5g0009350' => 'lja', 'Lj7C666G6' => 'lonja', 'Lj9A513T71' => 'lonja', 'LjContig00141g0006177' => 'lja', 'LjContig00141g0027993' => 'lja', 'LjContig00222g0018563' => 'lja', 'Lju891C1G4' => 'lonja', 'Lju891C1T8' => 'lonja', 'Lsat_1_v5_gn_1_110460' => 'lsa', 'Lsat_1_v5_gn_1_118500' => 'lsa', 'Lsat_1_v5_gn_1_36821' => 'lsa', 'Lsat_1_v5_gn_2_10161' => 'lsa', 'Lsat_1_v5_gn_2_109360' => 'lsa', 'Lsat_1_v5_gn_3_84241' => 'lsa', 'Lsat_1_v5_gn_5_134201' => 'lsa', 'Lsat_1_v5_gn_5_145061' => 'lsa', 'Lsat_1_v5_gn_5_37180' => 'lsa', 'Lsat_1_v5_gn_6_26160' => 'lsa', 'Lsat_1_v5_gn_9_25101' => 'lsa', 'Lsat_1_v5_gn_9_42281' => 'lsa', 'Manes.03G026700' => 'mes', 'Manes.04G134700' => 'mes', 'Manes.06G161400' => 'mes', 'Manes.12G119601' => 'mes', 'Manes.14G005400' => 'mes', 'Manes.16G108900' => 'mes', 'Manes.16G109200' => 'mes', 'Manes.18G014000' => 'mes', 'Mapoly0022s0069' => 'mpo', 'Mapoly0056s0008' => 'mpo', 'MBI01_g10123_MAGBIO' => 'mbi', 'MBI04_g34409_MAGBIO' => 'mbi', 'MBI05_g15358_MAGBIO' => 'mbi', 'MBI13_g04770_MAGBIO' => 'mbi', 'MBI16_g35809_MAGBIO' => 'mbi', 'MD02G1066500' => 'mdo', 'MD02G1194700' => 'mdo', 'MD03G1170700' => 'mdo', 'MD09G1202200' => 'mdo', 'MD11G1188100' => 'mdo', 'MD15G1012900' => 'mdo', 'MD15G1197000' => 'mdo', 'MD15G1305100' => 'mdo', 'MD17G1183100' => 'mdo', 'Medtr1g025140' => 'mtr', 'Medtr4g097900' => 'mtr', 'Medtr5g009000' => 'mtr', 'Medtr6g088795' => 'mtr', 'Medtr8g014530' => 'mtr', 'Medtr8g102460' => 'mtr', 'MELO3C003755.2' => 'cme', 'MELO3C004591.2' => 'cme', 'MELO3C004690.2' => 'cme', 'MELO3C007677.2' => 'cme', 'MELO3C014574.2' => 'cme', 'MELO3C015169.2' => 'cme', 'MELO3C015416.2' => 'cme', 'MELO3C025969.2' => 'cme', 'Migut.D00635' => 'egut', 'Migut.D00988' => 'egut', 'Migut.H00306' => 'egut', 'Migut.I00956' => 'egut', 'Migut.J01098' => 'egut', 'MSTRG.17614' => 'ama', 'MSTRG.18447' => 'ama', 'MSTRG.19551' => 'ama', 'MSTRG.21361' => 'ama', 'MSTRG.22635' => 'ama', 'MSTRG.4754' => 'ama', 'MSTRG.6023' => 'ama', 'Nitab4.5_0000093g0080' => 'nta', 'Nitab4.5_0000300g0200' => 'nta', 'Nitab4.5_0000396g0130' => 'nta', 'Nitab4.5_0000566g0050' => 'nta', 'Nitab4.5_0002561g0090' => 'nta', 'Nitab4.5_0002726g0090' => 'nta', 'Nitab4.5_0004969g0090' => 'nta', 'Nitab4.5_0006878g0050' => 'nta', 'Nitab4.5_0011529g0010' => 'nta', 'Nitab4.5_0012451g0020' => 'nta', 'Nitab4.5_0022896g0010' => 'nta', 'Nn1g03144' => 'nnu', 'Nn1g06700' => 'nnu', 'Nn2g15059' => 'nnu', 'Nn2g16049' => 'nnu', 'Nn3g21161' => 'nnu', 'Nn3g21403' => 'nnu', 'Nn4g24126' => 'nnu', 'Nn5g27452' => 'nnu', 'Nn5g29130' => 'nnu', 'Nn5g30156' => 'nnu', 'Nn5g30295' => 'nnu', 'Nn6g35334' => 'nnu', 'Nn7g36444' => 'nnu', 'Nn8g39055' => 'nnu', 'Oeu011489.1' => 'oeu', 'Oeu015772.1' => 'oeu', 'Oeu015783.1' => 'oeu', 'Oeu015811.1' => 'oeu', 'Oeu018576.1' => 'oeu', 'Oeu024086.1' => 'oeu', 'Oeu025889.1' => 'oeu', 'Oeu046268.1' => 'oeu', 'Oeu059810.1' => 'oeu', 'Oeu061299.2' => 'oeu', 'Oeu062405.1' => 'oeu', 'Os01g0190400' => 'osa', 'Os01g0722700' => 'osa', 'Os01g0742500' => 'osa', 'Os01g0940100' => 'osa', 'Os05g0187100' => 'osa', 'Os05g0375100' => 'osa', 'Os05g0522500' => 'osa', 'Os05g0532600' => 'osa', 'Os07g0197100' => 'osa', 'Os07g0446800' => 'osa', 'Peaxi162Scf00004g03812' => 'pax', 'Peaxi162Scf00038g01034' => 'pax', 'Peaxi162Scf00096g00129' => 'pax', 'Peaxi162Scf00207g01232' => 'pax', 'Peaxi162Scf00438g00078' => 'pax', 'Peaxi162Scf00944g00032' => 'pax', 'PGR102G0230' => 'pgr', 'PGR102G2355' => 'pgr', 'PGR119G2001' => 'pgr', 'PGR142G2174' => 'pgr', 'PGSC0003DMG400000295' => 'stu', 'PGSC0003DMG400002525' => 'stu', 'PGSC0003DMG400009861' => 'stu', 'PGSC0003DMG400013187' => 'stu', 'PGSC0003DMG400016521' => 'stu', 'PGSC0003DMG400030624' => 'stu', 'Phvul.001G007000' => 'pvu', 'Phvul.002G034000' => 'pvu', 'Phvul.002G308400' => 'pvu', 'Phvul.003G231300' => 'pvu', 'Phvul.004G175500' => 'pvu', 'Phvul.010G144900' => 'pvu', 'Phvul.011G023700' => 'pvu', 'Potri.001G190400' => 'ptr', 'Potri.001G254800' => 'ptr', 'Potri.005G238600' => 'ptr', 'Potri.007G009300' => 'ptr', 'Potri.009G050000' => 'ptr', 'Potri.018G088300' => 'ptr', 'Pp3c10_8650' => 'ppa', 'Pp3c14_6150' => 'ppa', 'Pp3c15_12840' => 'ppa', 'Pp3c18_12510' => 'ppa', 'Pp3c19_20120' => 'ppa', 'Pp3c1_5000' => 'ppa', 'Pp3c21_19280' => 'ppa', 'Pp3c22_9450' => 'ppa', 'Pp3c23_970' => 'ppa', 'Pp3c2_11350' => 'ppa', 'Pp3c8_18980' => 'ppa', 'Pp3c8_20680' => 'ppa', 'PRCOL_00005926' => 'pco', 'Prupe.1G366000' => 'ppe', 'Prupe.3G057800' => 'ppe', 'Prupe.4G256200' => 'ppe', 'Prupe.6G212100' => 'ppe', 'Prupe.7G218800' => 'ppe', 'Psat1g048360' => 'psa', 'Psat2g186960' => 'psa', 'Psat4g080080' => 'psa', 'Psat4g092720' => 'psa', 'Psat4g197200' => 'psa', 'Psat6g003120' => 'psa', 'Psat7g016600' => 'psa', 'PSO063G0356' => 'pso', 'PSO063G2294' => 'pso', 'PSO063G2370' => 'pso', 'PSO063G2908' => 'pso', 'PSO063G3557' => 'pso', 'PSO063G4489' => 'pso', 'PSO063G5939' => 'pso', 'PSO170G0955' => 'pso', 'PSO170G4044' => 'pso', 'PSO170G5449' => 'pso', 'PSO210G0785' => 'pso', 'PSO210G1011' => 'pso', 'PSO210G1208' => 'pso', 'PSO339G0563' => 'pso', 'PSO339G2386' => 'pso', 'PSO339G2765' => 'pso', 'PSO339G6651' => 'pso', 'PSO384G2443' => 'pso', 'PSO384G2800' => 'pso', 'PSO384G4920' => 'pso', 'PSO384G5076' => 'pso', 'PSO700G0027' => 'pso', 'PSO700G0346' => 'pso', 'PSO761G0131' => 'pso', 'PSO782G3104' => 'pso', 'PSO782G3245' => 'pso', 'PSO832G1231' => 'pso', 'PSO832G2011' => 'pso', 'PSO832G2261' => 'pso', 'PSO832G2482' => 'pso', 'QL01p018167' => 'qlo', 'QL01p018218' => 'qlo', 'QL02p011502' => 'qlo', 'QL02p041388' => 'qlo', 'QL05p019749' => 'qlo', 'QL06p037936' => 'qlo', 'RcHm_v2.0_Chr2g0091971' => 'rch', 'RcHm_v2.0_Chr2g0109591' => 'rch', 'RcHm_v2.0_Chr2g0140711' => 'rch', 'RcHm_v2.0_Chr6g0302781' => 'rch', 'Rhsim03G0236500' => 'rsi', 'Rhsim05G0028600' => 'rsi', 'Rhsim05G0028700' => 'rsi', 'Rhsim05G0029000' => 'rsi', 'Rhsim05G0039500' => 'rsi', 'Rhsim06G0021800' => 'rsi', 'Rhsim10G0085000' => 'rsi', 'Rhsim12G0083600' => 'rsi', 'Sabra01G0151100' => 'sbr', 'Sabra05G0184400' => 'sbr', 'Sabra06G0126200' => 'sbr', 'Sabra07G0007100' => 'sbr', 'Sabra09G0036600' => 'sbr', 'Sabra16G0155400' => 'sbr', 'Sabra18G0076800' => 'sbr', 'SalBow1G0214' => 'sbo', 'SalBow3G1455' => 'sbo', 'SalBow6G0233' => 'sbo', 'SalBow6G2041' => 'sbo', 'SalBow6G3113' => 'sbo', 'SalBow7G2422' => 'sbo', 'SalBow7G2585' => 'sbo', 'Sc02g0008560' => 'sci', 'Sc14g0000430' => 'sci', 'Sc15g0001850' => 'sci', 'Sc15g0001860' => 'sci', 'Sc16g0011230' => 'sci', 'Sed0005073' => 'sed', 'Sed0006358' => 'sed', 'Sed0013797' => 'sed', 'Sed0015544' => 'sed', 'Sed0018528' => 'sed', 'Sed0022951' => 'sed', 'Sed0023579' => 'sed', 'Sed0025616' => 'sed', 'SEGI_02350' => 'sgi', 'SEGI_11257' => 'sgi', 'SEGI_11966' => 'sgi', 'SEGI_18681' => 'sgi', 'SEGI_19505' => 'sgi', 'SEGI_19598' => 'sgi', 'SEGI_26261' => 'sgi', 'SGA_v2.0_scaffold159G37527' => 'sas', 'SGA_v2.0_scaffold25G10709' => 'sas', 'SGA_v2.0_scaffold265G46067' => 'sas', 'SGA_v2.0_scaffold29G12293' => 'sas', 'SGA_v2.0_scaffold340G49287' => 'sas', 'SGA_v2.0_scaffold3551G54360' => 'sas', 'SGA_v2.0_scaffold3869G54403' => 'sas', 'SGA_v2.0_scaffold44G16967' => 'sas', 'SGA_v2.0_scaffold540G52802' => 'sas', 'SGA_v2.0_scaffold62G21558' => 'sas', 'SGA_v2.0_scaffold68G22943' => 'sas', 'SGA_v2.0_scaffold85G26578' => 'sas', 'SGA_v2.0_scaffold8G04564' => 'sas', 'SGA_v2.0_scaffold913G53722' => 'sas', 'SGA_v2.0_scaffold913G53723' => 'sas', 'SHI27394' => 'shi', 'SMO134G0275' => 'smo', 'SMO141G0303' => 'smo', 'SMO147G0324' => 'smo', 'SMO230G0110' => 'smo', 'Solyc02g091830.3' => 'sly', 'Solyc03g121070.3' => 'sly', 'Solyc04g081400.3' => 'sly', 'Solyc06g066440.3' => 'sly', 'Solyc11g065220.2' => 'sly', 'Solyc12g008510.2' => 'sly', 'Sopen02g036410' => 'spe', 'Sopen03g039900' => 'spe', 'Sopen04g035010' => 'spe', 'Sopen06g024730' => 'spe', 'Sopen11g024930' => 'spe', 'Sopen12g003460' => 'spe', 'Sp1g34820' => 'spa', 'Sp1g37290' => 'spa', 'Sp3g18070' => 'spa', 'Sp3g33200' => 'spa', 'Sp7g35480' => 'spa', 'SpUn0813_0010' => 'spa', 'TAR369G0981' => 'tar', 'TAR376G0346' => 'tar', 'TAR383G0200' => 'tar', 'TAR622G0620' => 'tar', 'TAR624G0437' => 'tar', 'TAR625G1161' => 'tar', 'TAR625G1526' => 'tar', 'TAR626G0459' => 'tar', 'TAR633G2639' => 'tar', 'TAR636G1111' => 'tar', 'TAR636G2045' => 'tar', 'THA.LOC104804004' => 'tha', 'THA.LOC104804544' => 'tha', 'THA.LOC104811184' => 'tha', 'THA.LOC104814575' => 'tha', 'Thecc.01G081200' => 'tca', 'Thecc.06G100700' => 'tca', 'Thecc.08G043700' => 'tca', 'Thecc.09G099800' => 'tca', 'Thecc.09G240700' => 'tca', 'Thhalv10001968m.g' => 'esa', 'Thhalv10011415m.g' => 'esa', 'Thhalv10011426m.g' => 'esa', 'Thhalv10020562m.g' => 'esa', 'Thhalv10027262m.g' => 'esa', 'TPR.G10219' => 'tpr', 'TPR.G22427' => 'tpr', 'TPR.G23495' => 'tpr', 'TPR.G26397' => 'tpr', 'TPR.G33509' => 'tpr', 'TPR.G33537' => 'tpr', 'TPR.G35438' => 'tpr', 'TPR.G37960' => 'tpr', 'TPR.G40352' => 'tpr', 'TPR.G7477' => 'tpr', 'TWI12G0502' => 'twi', 'TWI18G0301' => 'twi', 'TWI23G0804' => 'twi', 'TWI34G1407' => 'twi', 'TWI39G0048' => 'twi', 'TWI53G1748' => 'twi', 'TWI56G1306' => 'twi', 'TWI63G1571' => 'twi', 'unitig_62.g23763' => 'ugi', 'unitig_8.g3277' => 'ugi', 'unitig_85.g27196' => 'ugi', 'vmacro05436' => 'vma', 'vmacro06254' => 'vma', 'vmacro10850' => 'vma', 'vmacro14273' => 'vma', 'vmacro21723' => 'vma', 'VMungo0251G0393' => 'vmu', 'VMungo0251G1455' => 'vmu', 'VMungo0331G1325' => 'vmu', 'VMungo0464G1220' => 'vmu', 'VMungo0647G1048' => 'vmu', 'VMungo1127G1513' => 'vmu', 'VMungo1215G2405' => 'vmu', 'Zm00001eb121400' => 'zma', 'Zm00001eb141560' => 'zma', 'Zm00001eb153620' => 'zma', 'Zm00001eb154520' => 'zma', 'Zm00001eb283530' => 'zma', 'Zm00001eb285110' => 'zma', 'Zm00001eb293670' => 'zma', 'Zm00001eb353560' => 'zma', 'Zm00001eb363200' => 'zma', 'Zm00001eb382820' => 'zma' ) $gf_id = 'HOM05D000745' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000745' ) $data_identifier = 'HOM05D000745' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 24, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 5, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 9, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 14, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 12, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 30, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 15, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382820' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1